Statistical Population Genomics

A Population Genomics Lexicon: 2025 Edition.- Data Management and Summary Statistics with PLINK.- Processing and Analyzing Multiple Genome Alignments with MafFilter 1.4.- Exploring Population Structure with Admixture Models and Principal Components Analysis.- Demographic Inference Using the Site Frequency Spectrum (SFS) with Moments and Demes.- MSMC and MSMC2: The Multiple Sequentially Markovian Coalescent.- Inference of Biological Traits Using the Sequentially Markovian Coalescent.- Inferring the Species Tree and the Multispecies Ancestral Recombination Graph with iTRAILS.- Recombination Rate Estimation with Pyrho.- Inferring Genomic Landscapes with the Integrative Sequentially Markov Coalescent (iSMC).- Population Genomics by Reconstructing Whole-Genome Genealogies Using Relate.- Inference of the Distribution of Fitness Effects and Its Genomic Covariates from Site Frequency Spectrum Data Using fastDFE.- Deep Learning Scans for Selective Sweeps Using RAiSD-AI.- An Introduction to SLiM: Eco-Evolutionary Forward Genetic Simulation.- Coalescent Simulation with msprime.- Bridging Forward-in-Time and Coalescent Simulations Using Pyslim.- Population Genomic Processes in Brassicaceae in the Light of Mating System Variation.- Population Genomics on the Fly: Recent Advances in Drosophila.- Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote.- Avian Population Genomics: Latest Findings and Future Prospects.- Population and Evolutionary Genomics of Lizards and Snakes.- Population Genomics of Mice and Rats.- Population Genomics in Primates.